Index

A

add_another_cooccurrence_profile() (fip.profiles.CooccurrenceProfile method)

C

convert_to_zscore() (fip.profiles.InterrelationProfile method)

CooccurrenceProbabilityProfile (class in fip.profiles) CooccurrenceProfile (class in fip.profiles)

D

distinct_features() (fip.profiles.InterrelationProfile method)

F

features2cooccurrences() (fip.profiles.InterrelationProfile static method) features_interrelation_values() (fip.profiles.InterrelationProfile method) fip module fip.chem module fip.profiles module

from_cooccurrence_probability_profile() (fip.profiles.PointwiseMutualInformationProfile class method) from_cooccurrence_probability_profiles() (fip.profiles.PointwiseJeffreysDivergenceProfile class method) (fip.profiles.PointwiseKLDivergenceProfile class method) from_cooccurrence_profile() (fip.profiles.CooccurrenceProbabilityProfile class method) from_dataframe() (fip.profiles.InterrelationProfile class method) from_dict() (fip.profiles.InterrelationProfile class method) from_feature_lists() (fip.profiles.CooccurrenceProfile class method) from_feature_lists_split_on_feature() (fip.profiles.CooccurrenceProfile class method)

G

get_imputation_value() (fip.profiles.CooccurrenceProbabilityProfile method) (fip.profiles.CooccurrenceProfile method) (fip.profiles.InterrelationProfile method) (fip.profiles.PointwiseKLDivergenceProfile method) (fip.profiles.PointwiseMutualInformationProfile method)

I

imputable_standalone_probabilities() (fip.profiles.CooccurrenceProbabilityProfile method) interrelation_value() (fip.profiles.InterrelationProfile method)

InterrelationProfile (class in fip.profiles) iterate_feature_interrelations() (fip.profiles.InterrelationProfile method)

M

mean_feature_interrelation_value() (fip.profiles.InterrelationProfile method) mean_interrelation_value() (fip.profiles.CooccurrenceProbabilityProfile method) (fip.profiles.CooccurrenceProfile method) (fip.profiles.InterrelationProfile method) (fip.profiles.PointwiseKLDivergenceProfile method) (fip.profiles.PointwiseMutualInformationProfile method)

mean_raw_interrelation_value() (fip.profiles.InterrelationProfile method) mean_self_relation_value() (fip.profiles.InterrelationProfile method) module fip fip.chem fip.profiles

N

num_features() (fip.profiles.InterrelationProfile method)

num_max_interrelations() (fip.profiles.InterrelationProfile method) num_raw_interrelations() (fip.profiles.InterrelationProfile method)

P

PointwiseJeffreysDivergenceProfile (class in fip.profiles)

PointwiseKLDivergenceProfile (class in fip.profiles) PointwiseMutualInformationProfile (class in fip.profiles)

R

rdmol2brics_blocs_smiles() (in module fip.chem) rdmol2morgan_feature_smiles() (in module fip.chem) rdmol2smiles() (in module fip.chem) rdmol_bonds2fragment_smiles() (in module fip.chem)

rdmol_has_substructure_pattern() (in module fip.chem) rdmol_locations2fragments_smiles() (in module fip.chem) relative_feature_divergence() (fip.profiles.PointwiseKLDivergenceProfile method) relative_feature_tightness() (fip.profiles.PointwiseMutualInformationProfile method) row_zscore() (fip.profiles.InterrelationProfile static method)

S

sdf2rdmols() (in module fip.chem) select_all() (fip.profiles.InterrelationProfile method) select_major_interrelations() (fip.profiles.InterrelationProfile method) select_major_self_relations() (fip.profiles.InterrelationProfile method) select_raw_interrelations() (fip.profiles.InterrelationProfile method) select_raw_interrelations_involving() (fip.profiles.InterrelationProfile method) select_self_relations() (fip.profiles.InterrelationProfile method) self_relations_dict() (fip.profiles.InterrelationProfile method) smarts2rdmol() (in module fip.chem)

smiles2rdmol() (in module fip.chem) standard_interrelation_deviation() (fip.profiles.CooccurrenceProbabilityProfile method) (fip.profiles.CooccurrenceProfile method) (fip.profiles.InterrelationProfile method) (fip.profiles.PointwiseKLDivergenceProfile method) (fip.profiles.PointwiseMutualInformationProfile method) standard_raw_interrelation_deviation() (fip.profiles.InterrelationProfile method) standard_self_relation_deviation() (fip.profiles.InterrelationProfile method) standardize_mol() (in module fip.chem)

T

to_csv() (fip.profiles.InterrelationProfile method)

to_distance_matrix() (fip.profiles.InterrelationProfile method) to_explicit_matrix() (fip.profiles.InterrelationProfile method)